35 questions · 14 almanac · 0 findings

Protein Folding

How proteins acquire their functional shapes.

Almanac Twenty-Two Years to See One Molecule
  • How did solving haemoglobin and myoglobin's structures give rise to structural biology as a discipline?
  • Why does a protein's three-dimensional fold determine its biological function?
Almanac A Protein Remembers Its Own Shape
  • What did Anfinsen's ribonuclease A experiments show about how a protein knows what shape to fold into?
  • What is the thermodynamic hypothesis of protein folding, and why did it matter that a denatured protein could refold on its own?
  • How does Anfinsen's thermodynamic hypothesis connect to modern tools like AlphaFold?
Almanac A Stray Antigen and a Laughing Illness
  • Why was kuru, the disease Gajdusek studied among the Fore people, transmitted through the ritual consumption of the dead?
  • What made kuru's infectious agent seem impossible given that it had no detectable DNA or RNA?
  • How did Gajdusek's work on kuru's slow infectious agent later connect to the discovery of prions and BSE?
Almanac A Contagion With No Genes
  • Why did diseases like scrapie and kuru puzzle virologists who could find no nucleic acid transmitting them?
  • What is a prion, and how does a misfolded protein induce neighbouring proteins to misfold as well?
  • Why did Stanley Prusiner's proposal violate a principle molecular biologists considered settled about how biological information flows?
  • How did the prion hypothesis eventually explain mad cow disease and its human variant?
Almanac A Protein That Infects Without Genes
  • How can a misfolded protein spread disease without any DNA or RNA involved?
  • Why did Prusiner's prion hypothesis contradict the central dogma of molecular biology so directly?
  • What diseases in sheep and humans led Prusiner to his theory of infectious proteins?
  • How did the prion mechanism later connect to research on Alzheimer's and Parkinson's disease?
Almanac Proteins Need a Chaperone to Fold Right
  • What are molecular chaperones, and how do they help proteins fold correctly?
  • How does the GroEL/GroES complex protect a newly made protein chain from misfolding?
  • Why is protein misfolding connected to diseases like Alzheimer's and Parkinson's?
Almanac The Cell's Quality-Control Alarm
  • What is the unfolded protein response and how does it let a cell detect misfolded proteins?
  • Why do neurodegenerative diseases like Parkinson's and ALS involve the same pathway Mori and Walter mapped?
Almanac Fifty Years, Then a Machine Learned the Shape
  • What did Christian Anfinsen's Nobel-winning work establish about how a protein's shape relates to its amino acid sequence?
  • How did the CASP competition measure progress on the protein-folding problem for over two decades?
  • What accuracy did DeepMind's AlphaFold2 achieve at CASP14, and how did it compare to X-ray crystallography?
  • Why did a machine-learning approach succeed where decades of molecular dynamics simulation had struggled?
Almanac Fifty Years, Then a Machine Learned the Shape
  • What is the protein-folding problem, and why had it resisted solution for fifty years?
  • How accurate was AlphaFold 2 compared to experimental structures at the CASP competition?
  • How did the AlphaFold protein structure database change the work of structural biologists who couldn't crystallise their proteins?
Almanac Fifty Years, Then a Machine Learned the Shape
  • What did Anfinsen's 1962 work show about the relationship between a protein's amino acid sequence and its three-dimensional shape?
  • How does AlphaFold2 predict a protein's structure directly from its sequence, and how accurate is it compared to experimental methods?
  • How did solving the protein-folding problem change the questions structural biologists ask?